A compact 180 kV electron beam system is designed for high power microwave generation. The electron beam system is consists of a secondary energy storage device, which can deliver energy to the load at faster rate than usual primary energy storage system such as tesla transformers or marx generator. The short duration, high voltage pulse with fast rise time and good flattop is applied to vacuum diode for high power microwave generation. The compact electron beam system is made up of single turn primary tesla transformer which charges a helical pulse forming line and transfers its energy to vacuum diode through a high voltage pressurized spark gap switch. We have used helical pulse forming line which has higher inductance as compared to coaxial pulse forming line, which in turns increases, the pulse width and reduce the length of the pulse forming line. Water dielectric medium is used because of its high dielectric constant, high dielectric strength and efficient energy storage capability. The time dependent breakdown property and high relative permittivity of water makes it an ideal choice for this system. The high voltage flat-top pulse of 90 kV, 260 ns is measured across the matched load. In this article we have reported the design details, simulation and initial experimental results of 180 kV pulsed electron beam system for high power microwave generation.